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IBD transcriptomics studies in GEO

ID	GSE	Title	Organism	Data	GEO ID	GPL	Samples
1	GSE174331	Next generation sequencing facilitates quantitative analysis of colonic tissue from miR-7 deficiency and WT mice with IBD mice, and human colonic epithelial cells transfected-with NC/miR-7 inhibitor/miR-7 inhibitor plus Erlotinib following LPS treatment	Homo sapiens	Expression profiling by high throughput sequencing	200174331	GPL24247	7 Samples
2	GSE235236	Bulk RNAseq expression data of colon biopsies from intestinal mucosa of non-IBD controls and patients with Crohn's disease or ulcerative colitis	Homo sapiens	Expression profiling by high throughput sequencing	200235236	GPL21290	56 Samples
3	GSE228165	Responsiveness to vedolizumab therapy in ulcerative colitis is associated with alterations in immune cell-cell communications	Homo sapiens	Expression profiling by high throughput sequencing	200228165	GPL24676	54 Samples
4	GSE230113	Protocadherin 20 maintains intestinal barrier function to protect against Crohn’s disease by targeting ATF6	Homo sapiens	Expression profiling by high throughput sequencing	200230113	GPL16791	20 Samples
5	GSE234713	IBD CosMx NanoString data from colonic mucosa	Homo sapiens	Other	200234713	GPL33484	9 Samples
6	GSE214695	IBD single cell data from colonic mucosa	Homo sapiens	Expression profiling by high throughput sequencing	200214695	GPL18573	18 Samples
7	GSE169360	Anti-apoptotic genes and non-coding RNAs are potential outcome predictors for ulcerative colitis	Homo sapiens	Expression profiling by high throughput sequencing	200169360	GPL16791	56 Samples
8	GSE231993	Selective oxidative protection leads to tissue topological changes orchestrated by macrophage during ulcerative colitis	Homo sapiens	Expression profiling by high throughput sequencing	200231993	GPL18573	12 Samples
9	GSE215068	Transcriptome analysis in acute GI GVHD reveals a unique signature in children and shared biology with pediatric IBD	Homo sapiens	Expression profiling by high throughput sequencing	200215068	GPL24676	33 Samples
10	GSE227747	Transcriptome Profiling of Intact Bowel Wall Reveals that PDE1A and SEMA3D are Possible Markers with Roles in Enteric Smooth Muscle Apoptosis, Proliferative Disorders, and Autonomic Nervous Abnormality in Crohn's Disease.	Homo sapiens	Expression profiling by high throughput sequencing	200227747	GPL20795	15 Samples
11	GSE225199	Persistent Inflammation of the Rectum in Perianal-Fisulizing Crohn's Disease Associates with Goblet Cell Function	Homo sapiens	Expression profiling by high throughput sequencing	200225199	GPL24676	13 Samples
12	GSE197698	Transcriptional and functional characterization of human intestinal organoid and monolayer models for IBD-therapeutic development	Homo sapiens	Expression profiling by high throughput sequencing	200197698	GPL24676	211 Samples
13	GSE203380	Geometric engineering of organoid culture for enhanced organogenesis in a dish	Homo sapiens	Expression profiling by high throughput sequencing	200203380	GPL24676	5 Samples
14	GSE157020	TSG-6 supports fistulizing Crohn’s disease by a mechanoregulated activation of the epithelial-to-mesenchymal transition	Homo sapiens	Expression profiling by high throughput sequencing	200157020	GPL18573	30 Samples
15	GSE221261	Aberrant miR-29 is a predictive feature of severe phenotypes in pediatric Crohn’s disease	Homo sapiens	Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing	200221261	GPL19057	21 Samples
16	GSE220815	Colonic mucosa of ulcerative colitis patients treated with biological agents	Homo sapiens	Expression profiling by high throughput sequencing	200220815	GPL21290	12 Samples
17	GSE185061	Longitudinal Rectal tissue DNA methylation Profiling Identifies Cell-specific Signatures for Disease severity and Outcome in Ulcerative Colitis	Homo sapiens	Methylation profiling by genome tiling array	200185061	GPL21145	369 Samples
18	GSE174159	Identifying new pronostic markers of IBD	Homo sapiens	Expression profiling by high throughput sequencing	200174159	GPL20301	39 Samples
19	GSE202052	Assessing Cellular and Transcriptional diversity of IIeal Mucosa amongst Treatment Naïve and Treated Crohn’s disease	Homo sapiens	Expression profiling by high throughput sequencing	200202052	GPL24676	27 Samples
20	GSE215144	Association of RNASET2 Gene Polymorphisms with Decreased Expression and Clinical Characteristics of Severity in Crohn’s Disease	Homo sapiens	Expression profiling by high throughput sequencing	200215144	GPL18573	72 Samples
21	GSE212849	Prediction of Golimumab Response in the PROgECT Phase 2a Open-Label Trial of Patients With Ulcerative Colitis	Homo sapiens	Expression profiling by array	200212849	GPL570	84 Samples
22	GSE207022	Efficacy and safety of ustekinumab treatment in patients with Crohn's disease	Homo sapiens	Expression profiling by array	200207022	GPL13158	148 Samples
23	GSE66407	Gut biopsies from patients with Crohn's Disease and Ulcerative Colitis and healthy controls	Homo sapiens	Expression profiling by array	200066407	GPL19833	368 Samples
24	GSE183620	RNA sequencing of CD11b+ cells isolated from human gut mucosal biopsies of IBD patients	Homo sapiens	Expression profiling by high throughput sequencing	200183620	GPL24676	58 Samples
25	GSE206285	Efficacy and safety of ustekinumab treatment in patients with ulcerative colitis	Homo sapiens	Expression profiling by array	200206285	GPL13158	568 Samples
26	GSE208303	RNA-seq for inflamed and non-inflamed mucosa in patients with Crohn's disease	Homo sapiens	Expression profiling by high throughput sequencing	200208303	GPL16791	35 Samples
27	GSE184291	Single cell analysis of innate lymphoid cells and T lymphocytes in the small intestinal resection of Crohn’s disease patient versus those of adjacent non-inflamed tissue.	Homo sapiens	Expression profiling by high throughput sequencing	200184291	GPL24676	2 Samples
28	GSE151686	Ileal S100A9 expression distinguishes Crohn’s disease patients by age at diagnosis	Homo sapiens	Expression profiling by high throughput sequencing	200151686	GPL24676	34 Samples
29	GSE164985	Single-cell analysis of colonic epithelium reveals unexpected shifts in cellular composition and molecular phenotype in treatment-naïve adult Crohn’s disease	Homo sapiens	Expression profiling by high throughput sequencing	200164985	GPL18573	7 Samples
30	GSE192786	Fibrotic signatures in Crohn's disease patients	Homo sapiens	Expression profiling by high throughput sequencing	200192786	GPL16791	40 Samples
31	GSE191234	IBD HIBEC and HILEC transcriptome compendium	Homo sapiens	Expression profiling by high throughput sequencing	200191234	GPL16791	54 Samples
32	GSE165512	Characterization of the IL23-IL17 immune axis in IBD patients	Homo sapiens	Expression profiling by high throughput sequencing	200165512	GPL16791	170 Samples
33	GSE182424	Telomere dysfunction instigates inflammation in inflammatory bowel disease	Homo sapiens	Expression profiling by high throughput sequencing	200182424	GPL18573	12 Samples
34	GSE173642	CD127+CD94+ innate lymphoid cells expanded in Crohn’s disease patients highly express granulysin and perforin	Homo sapiens	Expression profiling by high throughput sequencing	200173642	GPL20301	6 Samples
35	GSE164918	Colonic mucosal injury responses	Homo sapiens	Expression profiling by high throughput sequencing	200164918	GPL24676	36 Samples
36	GSE159751	Next Generation Sequencing of Response to Mito-Tempo in Intestinal Mucosal Biopsies from Crohn's Disease patients	Homo sapiens	Expression profiling by high throughput sequencing	200159751	GPL11154	26 Samples
37	GSE183069	RNAseq of pedriatic IBD and XIAP-deficient biopsy samples	Homo sapiens	Expression profiling by high throughput sequencing	200183069	GPL18573	30 Samples
38	GSE182270	Ulcerative Colitis is characterized by an intense and plasmablast skewed humoral response that associates with treatment resistance and disease complications	Homo sapiens	Expression profiling by high throughput sequencing	200182270	GPL11154	9 Samples
39	GSE179285	Embark cross-sectional study of inactive and active lesions from the ileum and colon of inflammatory bowel disease patients	Homo sapiens	Expression profiling by array	200179285	GPL6480	254 Samples
40	GSE174460	Increased expression of yes-associated protein/YAP and transcriptional coactivator with PDZ-binding motif/TAZ activates intestinal fibroblasts to promote intestinal obstruction in Crohn’s disease	Homo sapiens	Expression profiling by high throughput sequencing	200174460	GPL20795	4 Samples
41	GSE178753	Hsa_circ_0001021 regulates intestinal epithelial barrier function via sponging miR-224-5p in ulcerative colitis	Homo sapiens	Expression profiling by array; Non-coding RNA profiling by array	200178753	GPL30304	15 Samples
42	GSE176255	A combination of circulating microRNA-375-3p, and chemokines CCL-11, CXCL12, and G-CSF differentiate Crohn’s Disease and Intestinal Tuberculosis	Homo sapiens	Non-coding RNA profiling by high throughput sequencing	200176255	GPL16791	9 Samples
43	GSE153866	Single cell RNA-seq of ileal biopsies from IBD patients	Homo sapiens	Expression profiling by high throughput sequencing	200153866	GPL18573	2 Samples
44	GSE173294	RNA sequencing for endoscopic biopsy tissue samples from controls and Crohn's disease patients, and organoids derived from these specimens.	Homo sapiens	Expression profiling by high throughput sequencing	200173294	GPL16791	24 Samples
45	GSE171244	Relating the transcriptome and microbiome by paired terminal ileal Crohn's disease	Homo sapiens	Expression profiling by high throughput sequencing	200171244	GPL16791	20 Samples
46	GSE150516	Common and rare variant prediction and penetrance of IBD in a large, multi-ethnic, health system-based biobank cohort	Homo sapiens	Expression profiling by high throughput sequencing	200150516	GPL18573	9 Samples
47	GSE161031	Precision rescue of SP140 SNP+/+ Crohn's disease patient peripheral blood mononuclear cells responses to lipopolysaccharide	Homo sapiens	Expression profiling by high throughput sequencing	200161031	GPL24676	30 Samples
48	GSE160804	Integrated analysis of DNA methylation and gene expression profiles identified S100A9 as a potential biomarker in ulcerative colitis	Homo sapiens	Expression profiling by array; Non-coding RNA profiling by array	200160804	GPL20115	6 Samples

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49	GSE152999	Induced organoids derived from patients with ulcerative colitis recapitulate the colitic reactivity	Homo sapiens	Expression profiling by high throughput sequencing	200152999	GPL24676	11 Samples
50	GSE157026	Transcriptomics analysis of mesenteric adipose tissue from Crohn's disease patients and healthy controls	Homo sapiens	Expression profiling by high throughput sequencing	200157026	GPL24676	22 Samples
51	GSE156044	Transcriptomics analysis of mesenteric adipose tissue from Crohn's disease patients and healthy controls [RNA-seq]	Homo sapiens	Expression profiling by high throughput sequencing	200156044	GPL24676	8 Samples
52	GSE141553	Colonic Crohn's left and right colon	Homo sapiens	Expression profiling by high throughput sequencing	200141553	GPL18573	2 Samples
53	GSE137680	Gene expression analysis of PBMC's from IBD subjects stimulated by combinations of LPS, MDP, anti-CD3/anti-CD28 antibodies, and anti-IL10R antibodies.	Homo sapiens	Expression profiling by array	200137680	GPL17586	886 Samples
54	GSE125527	Single-Cell Analyses Elucidate the Cellular and Molecular Landscape of Ulcerative Colitis	Homo sapiens	Expression profiling by high throughput sequencing; Other	200125527	GPL24676	103 Samples
55	GSE83448	Genome-wide transcriptional analysis in intestinal biopsies from Crohn's disease (CD) patients.	Homo sapiens	Expression profiling by array	200083448	GPL18134	53 Samples
56	GSE130038	Elevated colonic mucin expression correlates with extended time to surgery for ulcerative colitis patients	Homo sapiens	Expression profiling by high throughput sequencing	200130038	GPL16791	26 Samples
57	GSE103027	Epigenomic alterations are associated with mucosal microbiota and inflammation in inflammatory bowel disease	Homo sapiens	Methylation profiling by genome tiling array	200103027	GPL13534	100 Samples
58	GSE128682	Transcriptional signatures that define Ulcerative Colitis in remission	Homo sapiens	Expression profiling by high throughput sequencing	200128682	GPL21697	44 Samples
59	GSE143507	RNA sequencing data of peripheral blood isolated from Korean patients with Crohn's disease.	Homo sapiens	Expression profiling by high throughput sequencing	200143507	GPL16791	101 Samples
60	GSE121380	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	Homo sapiens	Expression profiling by high throughput sequencing	200121380	GPL20795	13 Samples
61	GSE126124	Concordance between gene expression in peripheral whole blood and colonic tissue in children with inflammatory bowel disease.	Homo sapiens	Expression profiling by array	200126124	GPL6244	176 Samples
62	GSE133061	Gene and miRNA expression data from a cohort of Chilean Ulcerative Colitis human intestinal samples	Homo sapiens	Non-coding RNA profiling by array; Expression profiling by array	200133061	GPL19117	32 Samples
63	GSE133060	Gene expression data from a cohort of Chilean Ulcerative Colitis human intestinal samples	Homo sapiens	Expression profiling by array	200133060	GPL4133	16 Samples
64	GSE133059	miRNA expression data from a cohort of Chilean Ulcerative Colitis human intestinal samples	Homo sapiens	Non-coding RNA profiling by array	200133059	GPL19117	16 Samples
65	GSE134809	Single-cell analysis of Crohn’s disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy	Homo sapiens	Expression profiling by high throughput sequencing	200134809	GPL18573	31 Samples
66	GSE134881	Single-cell analysis of Crohn’s disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy	Homo sapiens	Expression profiling by high throughput sequencing	200134881	GPL11154	199 Samples
67	GSE135905	Genetic influences on DNA methylation (mQTL) in pediatric Crohn's disease patients	Homo sapiens	Methylation profiling by genome tiling array	200135905	GPL21145	41 Samples
68	GSE134025	Ulcerative colitis gene expressions file	Homo sapiens	Expression profiling by array	200134025	GPL20115	6 Samples
69	GSE112366	Intestinal epithelial microvilli are abnormal in Crohn's disease	Homo sapiens	Expression profiling by array	200112366	GPL13158	388 Samples
70	GSE102134	Mucosal miRNA and gene expression profiling in ileum of patients with Crohn's disease	Homo sapiens	Expression profiling by array; Non-coding RNA profiling by array	200102134	GPL14613	120 Samples
71	GSE102133	Mucosal gene expression profiling in ileum of patients with Crohn's disease	Homo sapiens	Expression profiling by array	200102133	GPL6244	77 Samples
72	GSE102127	Mucosal miRNA expression profiling in ileum of patients with Crohn's disease	Homo sapiens	Non-coding RNA profiling by array	200102127	GPL14613	43 Samples
73	GSE95095	Differential Gene Expression between involved and uninvolved sites of Crohn’s disease: Insights into a Distinctive Pathogenesis Profile	Homo sapiens	Expression profiling by array	200095095	GPL14951	60 Samples
74	GSE115390	Differences in tissue immune cell populations following hematopoietic stem cell transplantation in Crohn’s disease patients	Homo sapiens	Expression profiling by high throughput sequencing	200115390	GPL20301	80 Samples
75	GSE92415	Characterization of molecular response to Golimumab in Ulcerative Colitis by mucosal biopsy mRNA expression profiling: results from PURSUIT-SC induction study	Homo sapiens	Expression profiling by array	200092415	GPL13158	183 Samples
76	GSE87473	Gene expression profiling of mucosal biopsies from pediatric or adult patients with moderately to severely active ulcerative colitis	Homo sapiens	Expression profiling by array	200087473	GPL13158	127 Samples
77	GSE87466	Gene expression profiling of mucosal biopsies from adult patients with moderately to severely active ulcerative colitis	Homo sapiens	Expression profiling by array	200087466	GPL13158	108 Samples
78	GSE87465	Gene expression profiling of mucosal biopsies from pediatric patients with moderately to severely active ulcerative colitis	Homo sapiens	Expression profiling by array	200087465	GPL13158	19 Samples
79	GSE114603	A systems biology approach identifies ANP32E and other biomarkers of glucocorticoid refractoriness in ulcerative colitis	Homo sapiens	Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing	200114603	GPL15456	76 Samples
80	GSE114591	A systems biology approach identifies ANP32E and other biomarkers of glucocorticoid refractoriness in ulcerative colitis [miRNA-Seq]	Homo sapiens	Non-coding RNA profiling by high throughput sequencing	200114591	GPL15456	38 Samples
81	GSE114527	A systems biology approach identifies ANP32E and other biomarkers of glucocorticoid refractoriness in ulcerative colitis [microarray]	Homo sapiens	Expression profiling by array	200114527	GPL14951	38 Samples
82	GSE105074	Elevation in cell cycle and protein metabolism gene transcription in inactive colonic tissue from Icelandic patients with ulcerative colitis	Homo sapiens	Expression profiling by array	200105074	GPL10558	57 Samples
83	GSE117875	Transcriptomic profile of intestinal epithelial cells obtained from ileal endoscopic biopsies from newly-diagnosed, pediatric Crohn's disease patients and healthy controls.	Homo sapiens	Expression profiling by high throughput sequencing	200117875	GPL16791	13 Samples
84	GSE101819	Colonic miR-31 is a molecular stratifier and prognostic determinant of Crohn’s disease	Homo sapiens	Non-coding RNA profiling by high throughput sequencing	200101819	GPL16791	264 Samples
85	GSE101817	Association between colonic level of microRNA 31 and subtypes of adult and pediatric Crohn's disease [pediatric]	Homo sapiens	Non-coding RNA profiling by high throughput sequencing	200101817	GPL16791	234 Samples
86	GSE101816	Colonic miR-31 is a molecular stratifier and prognostic determinant of Crohn’s disease [adult]	Homo sapiens	Non-coding RNA profiling by high throughput sequencing	200101816	GPL16791	30 Samples
87	GSE90607	Fibrostenotic phenotype of fibroblasts in Crohn's disease is dependent on tissue stiffness and reversed by LOX inhibition	Homo sapiens	Expression profiling by array	200090607	GPL10558	24 Samples
88	GSE102746	Transcriptome-analysis of patient-derived normal and ulcerative colitis intestinal epithelial organoids	Homo sapiens	Expression profiling by high throughput sequencing	200102746	GPL16791	20 Samples
89	GSE113015	Dynamics of genome alterations in Crohn’s disease associated colorectal carcinogenesis	Homo sapiens	Genome variation profiling by array	200113015	GPL10150	73 Samples
90	GSE112057	Whole Blood Transcriptome Profiling in Juvenile Idiopathic Arthritis and Inflammatory Bowel Disease	Homo sapiens	Expression profiling by high throughput sequencing	200112057	GPL11154	202 Samples
91	GSE111761	Differential expression of IBD susceptibility and IL23R associated pathway genes during ongoing anti-TNF therapy (anti-TNF non-responder vs anti-TNF responder)	Homo sapiens	Expression profiling by array	200111761	GPL13497	6 Samples
92	GSE110186	NOD2- and disease-specific gene expression profiles of peripheral blood mononuclear cells from Crohn’s disease patients	Homo sapiens	Expression profiling by array	200110186	GPL23159	24 Samples
93	GSE94648	Expression data from peripheral whole blood of non-IBD controls, CD and UC patients	Homo sapiens	Expression profiling by array	200094648	GPL19109	97 Samples
94	GSE75459	Plasma Long Noncoding RNA and mRNA Expression Profile of Crohn’s Disease identified by Microarray	Homo sapiens	Expression profiling by array; Non-coding RNA profiling by array	200075459	GPL16956	6 Samples
95	GSE90102	Genome-wide association study of abnormal Paneth cell phenotype in Japanese patients with Crohn's disease	Homo sapiens	Genome variation profiling by SNP array	200090102	GPL22697	98 Samples
96	GSE74265	Gene expression signature and mitochondrial DNA copy number variation in ulcerative colitis patients	Homo sapiens	Expression profiling by array	200074265	GPL570	30 Samples
97	GSE100833	A functional genomics predictive network model identifies regulators of inflammatory bowel disease: Microarray Analysis of Human Blood and Intestinal Biopsy Samples from a Phase 2b, Double-blind, Placebo-controlled Study of Ustekinumab in Crohn's Disease	Homo sapiens	Expression profiling by array	200100833	GPL13158	1717 Samples

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98	GSE84779	MicroRNAs Expression in the Ileal Pouch of Patients with Ulcerative Colitis is Robustly Up-Regulated and Correlates with Disease phenotypes	Homo sapiens	Non-coding RNA profiling by high throughput sequencing	200084779	GPL16791	61 Samples
99	GSE85499	Molecular classification of Crohn’s disease reveals two clinically relevant subtypes	Homo sapiens	Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing	200085499	GPL16791	53 Samples
100	GSE89667	Novel MicroRNA Signature to Differentiate Ulcerative Colitis from Crohn Disease: A Genome-Wide Study Using Next Generation Sequencing	Homo sapiens	Non-coding RNA profiling by high throughput sequencing	200089667	GPL16791	37 Samples
101	GSE75916	Expression data of epithelial organoid cultures generated from intestinal mucosa of non-IBD controls and patients with ulcerative colitis	Homo sapiens	Expression profiling by array	200075916	GPL20650	36 Samples
102	GSE73661	The effect of vedolizumab (anti-α4β7-integrin) therapy on colonic mucosal gene expression in patients with ulcerative colitis (UC)	Homo sapiens	Expression profiling by array	200073661	GPL6244	178 Samples
103	GSE81961	Peripheral Blood Methylation Profiling of Female Crohn’s Disease Patients	Homo sapiens	Methylation profiling by genome tiling array	200081961	GPL16304	40 Samples
104	GSE50594	EFFECT OF A NOVEL PROBIOTIC PREPARATION ON INDUCTION AND MAINTENANCE OF REMISSION IN ULCERATIVE COLITIS PATIENTS: A DOUBLE-BLIND PLACEBO CONTROLLED TRIAL	Homo sapiens	Expression profiling by array	200050594	GPL6244	54 Samples
105	GSE81266	Ileal pouch transcriptomics reveal shared pathogenesis between pouchitis and ulcerative colitis	Homo sapiens	Expression profiling by high throughput sequencing	200081266	GPL16791	77 Samples
106	GSE68570	Transportome profiling identifies profound alterations in Crohn’s disease partially restored by commensal bacteria	Homo sapiens	Expression profiling by array	200068570	GPL10558	11 Samples
107	GSE67250	Integration of genome-wide DNA methylome and transcriptome of human intestinal fibroblasts reveals novel candidate gene signatures in Crohn’s disease-associated fibrosis	Homo sapiens	Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing	200067250	GPL16791	12 Samples
108	GSE64801	Common inflammatory pathways between NEC and Crohn's disease	Homo sapiens	Expression profiling by high throughput sequencing	200064801	GPL11154	14 Samples
109	GSE72780	Intestinal epithelial cells from Crohn's Disease patients	Homo sapiens	Expression profiling by array	200072780	GPL570	9 Samples
110	GSE72819	Gene expression of baseline biopsies from etrolizumab-treated ulcerative colitis (UC) patients	Homo sapiens	Expression profiling by high throughput sequencing	200072819	GPL11154	73 Samples
111	GSE62207	Ileal immune maturation in Pediatric Crohn's Disease	Homo sapiens	Expression profiling by high throughput sequencing	200062207	GPL11154	310 Samples
112	GSE69762	Gene expression of human small intestine generated by biopsy specimens	Homo sapiens	Expression profiling by array	200069762	GPL6244	30 Samples
113	GSE68306	miR-193a-3p is a key tumor-suppressor in ulcerative colitis-associated colon cancer and promotes carcinogenesis through regulation of IL17RD.	Homo sapiens	Expression profiling by array; Other	200068306	GPL20111	45 Samples
114	GSE66824	Genomic and Clinical Effects Associated with a Relaxation Response Mind-Body Intervention in Patients with Irritable Bowel Syndrome and Inflammatory Bowel Disease	Homo sapiens	Expression profiling by array	200066824	GPL13158	66 Samples
115	GSE66545	Gene expression analysis in mesenteric arteries and veins in Crohn's disease compared to controls from nonIBD samples	Homo sapiens	Expression profiling by array	200066545	GPL6480	26 Samples
116	GSE48959	Mucosal expression profiling in (un)inflamed colon of patients with ulcerative colitis (UC)	Homo sapiens	Expression profiling by array; Non-coding RNA profiling by array	200048959	GPL6244	48 Samples
117	GSE48958	Mucosal gene expression profiling in (un)inflamed colon of patients with ulcerative colitis (UC)	Homo sapiens	Expression profiling by array	200048958	GPL6244	21 Samples
118	GSE48957	Mucosal miRNA expression profiling in (un)inflamed colon of patients with ulcerative colitis (UC)	Homo sapiens	Non-coding RNA profiling by array	200048957	GPL14613	27 Samples
119	GSE43009	miRNA data in colon mucosa samples from individuals with ulcerative colitis and normal controls	Homo sapiens	Non-coding RNA profiling by array	200043009	GPL16384	10 Samples
120	GSE42921	DNA methylation in a validation cohort of colon mucosa samples from individuals with Crohns' disease or ulcerative colitis and normal controls	Homo sapiens	Methylation profiling by genome tiling array	200042921	GPL13534	23 Samples
121	GSE53867	MicroRNA expression in human colon: Crohn's disease versus ulcerative colitis	Homo sapiens	Non-coding RNA profiling by array	200053867	GPL14149	5 Samples
122	GSE47908	Transcriptional analysis of left-sided colitis, pancolitis and ulcerative colitis-associated dysplasia	Homo sapiens	Expression profiling by array	200047908	GPL570	60 Samples
123	GSE53306	Differential Gene Expression between Active and Quiescent Stages of Ulcerative Colitis: Insights into a Distinctive Pathogenesis Profile	Homo sapiens	Expression profiling by array	200053306	GPL14951	40 Samples
124	GSE48634	Mucosal transcriptomics implicates under expression of FAM5C in the pathogenesis of ulcerative colitis	Homo sapiens	Expression profiling by array	200048634	GPL10558	171 Samples
125	GSE57945	Core Ileal Transcriptome in Pediatric Crohn Disease	Homo sapiens	Expression profiling by high throughput sequencing	200057945	GPL11154	322 Samples
126	GSE44275	Analysis of whole-genome copy-number variation in Crohn's disease fistula tissue	Homo sapiens	Genome variation profiling by high throughput sequencing	200044275	GPL10123	8 Samples
127	GSE46451	Effects of Inflammation and 5-ASA on ex vivo cultured ulcerative colitis biopsies	Homo sapiens	Expression profiling by array	200046451	GPL10558	12 Samples
128	GSE32146	DNA methylation in a discovery cohort of colon mucosa samples from individuals with Crohns' disease or ulcerative colitis and normal controls	Homo sapiens	Methylation profiling by genome tiling array	200032146	GPL13534	25 Samples
129	GSE46754	Gene expression analysis of omental and mesenteric adipose tissue in Crohn's disease and ulcerative colitis	Homo sapiens	Expression profiling by array	200046754	GPL6947	8 Samples
130	GSE32149	DNA methylation in Crohns' disease and ulcerative colitis	Homo sapiens	Methylation profiling by genome tiling array	200032149	GPL13534	73 Samples
131	GSE27899	Methylation profiling in Ulcerative colitis	Homo sapiens	Methylation profiling by array; Methylation profiling by genome tiling array	200027899	GPL8490	40 Samples
132	GSE37283	Gene Expression Changes in Non-Dysplastic Mucosa from Patients with Ulcerative Colitis Harboring Remote Neoplastic Lesions	Homo sapiens	Expression profiling by array	200037283	GPL13158	20 Samples
133	GSE32148	DNA methylation in peripheral blood from individuals with Crohns' disease or ulcerative colitis and normal controls	Homo sapiens	Methylation profiling by genome tiling array	200032148	GPL13534	48 Samples
134	GSE20941	Mediators in Crohn’s disease influence the gene expression profiles of mesenchymal progenitor cells differentiated into the osteoblastic lineage.	Homo sapiens	Expression profiling by array	200020941	GPL4133	12 Samples
135	GSE32273	Genome-wide maps of circulating miRNA biomarkers for Ulcerative Colitis	Homo sapiens	Non-coding RNA profiling by array	200032273	GPL8786	132 Samples
136	GSE22619	Genome wide expression data from discordant twins (ulcerative colitis, primary mucosal tissue)	Homo sapiens	Expression profiling by array	200022619	GDS4519	20 Samples
137	GDS4519	Monozygotic twin pairs discordant for ulcerative colitis: intestinal biopsies	Homo sapiens	Expression profiling by array, transformed count, 2 disease state, 10 individual sets	4519	GPL570	20 Samples
138	GSE15975	Analysis of Gene Expression changes in human intestinal endothelial-to-mesenchymal transition	Homo sapiens	Expression profiling by array	200015975	GPL6104	8 Samples
139	GSE15934	Analysis of Gene Expression changes in human intestinal endothelial-to-mesenchymal transition - TRANSFORMED GROUP	Homo sapiens	Expression profiling by array	200015934	GPL6104	4 Samples
140	GSE15933	Analysis of Gene Expression changes in human intestinal endothelial-to-mesenchymal transition - UNTREATED/CONTROL GROUP	Homo sapiens	Expression profiling by array	200015933	GPL6104	4 Samples
141	GSE26305	Genome-wide gene expression analysis for target genes to differentiate patients with intestinal tuberculosis and Crohn’s disease	Homo sapiens	Expression profiling by array	200026305	GPL6884	6 Samples
142	GSE25510	Gene expression patterns of biopsies from colonoscopies taken in 2007, 2008, and 2009 of an ulcerative colitis patient infected with Trichuris trichiura	Homo sapiens	Expression profiling by array	200025510	GPL5621	38 Samples
143	GSE25277	Gene expression patterns of biopsies from a colonoscopy taken in 2009 of an ulcerative colitis patient infected with Trichuris trichiura	Homo sapiens	Expression profiling by array	200025277	GPL5621	12 Samples
144	GSE25276	Gene expression patterns of biopsies from a colonoscopy taken in 2008 of an ulcerative colitis patient infected with Trichuris trichiura	Homo sapiens	Expression profiling by array	200025276	GPL5621	12 Samples
145	GSE25275	Gene expression patterns of biopsies from a colonoscopy taken in 2007 of an ulcerative colitis patient infected with Trichuris trichiura	Homo sapiens	Expression profiling by array	200025275	GPL5621	14 Samples
146	GSE24287	Differential early pathogenic changes in human ileal gene expression in Crohn's disease and ulcerative colitis	Homo sapiens	Expression profiling by array	200024287	GPL6480	99 Samples

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147	GSE21231	Gene expression changes associated with resistance to intravenous corticosteroid therapy in children with severe ulcerative colitis	Homo sapiens	Expression profiling by array	200021231	GDS4270	40 Samples
148	GDS4270	Intravenous corticosteroid therapy effect on children with severe ulcerative colitis: peripheral blood	Homo sapiens	Expression profiling by array,	4270	GPL6244	40 Samples
149	GSE14580	Mucosal gene signatures to predict response to infliximab in patients with ulcerative colitis	Homo sapiens	Expression profiling by array	200014580	GPL570	30 Samples
150	GSE11223	Colon biopsies from UC patients and healthy controls	Homo sapiens	Expression profiling by array	200011223	GDS3268	202 Samples
151	GDS3268	Colon epithelial biopsies of ulcerative colitis patients	Homo sapiens	Expression profiling by array,	3268	GPL1708	202 Samples
152	GSE3629	Molecular Marker for predicting development of cancer in ulcerative colitis	Homo sapiens	Expression profiling by array	200003629	GPL570	121 Samples
153	GSE3801	Gene Expression Profiling of Ulcerative Colitis	Homo sapiens	Expression profiling by array	200003801	GPL1352	2 Samples

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IBD GEO transcriptomics.xlsx

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